SEMI OpenIR  > 集成光电子学国家重点实验室
A complete genome assembly of Glaciecola mesophila sp nov sequenced by using BIGIS-4 sequencer system
Yuan LN; Ren LF; Li YT; Han WJ; Yu Y; Chu YN; Liu GM; Yu D; Teng MJ; Wang L; Wang XM; Zhou XG; Yu YD; Yu J; Yu, YD (reprint author), Chinese Acad Sci, Inst Semicond, Beijing 100083, Peoples R China, yudeyu@semi.ac.cn; junyu@big.ac.cn
2011
Source PublicationSCIENCE CHINA-LIFE SCIENCES
ISSN1674-7305
Volume54Issue:9Pages:835-840
AbstractUsing a pyrosequencing-based custom-made sequencer BIGIS-4, we sequenced a Gram-negative bacterium Glaciecola mesophila sp. nov. (Gmn) isolated from marine invertebrate specimens. We generated 152043 sequencing reads with a mean high-quality length of 406 bp, and assembled them using the BIGIS-4 post-processing module. No systematic low-quality data was detected beyond expected homopolymer-derived errors. The assembled Gmn genome is 5144318 bp in length and harbors 4303 annotated genes. A large number of metabolic genes correspond to various nutrients from surface marine invertebrates. Its abundant cold-tolerant and cellular signaling and related genes reveal a fundamental adaptation to low-temperature marine environment.
metadata_83集成光电子学国家重点实验室
KeywordAlteromonas-macleodii Bacterium Seawater Genes Sea
Subject Area光电子学
Funding OrganizationChinese Academy of Sciences Scientific Research Equipment[YZ200823]; Institutional Director's Initiative Fund; National Natural Science Foundation of China[61007033, 30971610, 40906097]; Institutional Initiative Fund
Indexed BySCI
Language英语
Date Available2012-02-06
Document Type期刊论文
Identifierhttp://ir.semi.ac.cn/handle/172111/22821
Collection集成光电子学国家重点实验室
Corresponding AuthorYu, YD (reprint author), Chinese Acad Sci, Inst Semicond, Beijing 100083, Peoples R China, yudeyu@semi.ac.cn; junyu@big.ac.cn
Recommended Citation
GB/T 7714
Yuan LN,Ren LF,Li YT,et al. A complete genome assembly of Glaciecola mesophila sp nov sequenced by using BIGIS-4 sequencer system[J]. SCIENCE CHINA-LIFE SCIENCES,2011,54(9):835-840.
APA Yuan LN.,Ren LF.,Li YT.,Han WJ.,Yu Y.,...&junyu@big.ac.cn.(2011).A complete genome assembly of Glaciecola mesophila sp nov sequenced by using BIGIS-4 sequencer system.SCIENCE CHINA-LIFE SCIENCES,54(9),835-840.
MLA Yuan LN,et al."A complete genome assembly of Glaciecola mesophila sp nov sequenced by using BIGIS-4 sequencer system".SCIENCE CHINA-LIFE SCIENCES 54.9(2011):835-840.
Files in This Item:
File Name/Size DocType Version Access License
A complete genome as(778KB) 限制开放--Application Full Text
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Yuan LN]'s Articles
[Ren LF]'s Articles
[Li YT]'s Articles
Baidu academic
Similar articles in Baidu academic
[Yuan LN]'s Articles
[Ren LF]'s Articles
[Li YT]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Yuan LN]'s Articles
[Ren LF]'s Articles
[Li YT]'s Articles
Terms of Use
No data!
Social Bookmark/Share
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.